Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA. (2010) Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC Genomics, 11:180.
Grahnen J. (2007) Computer-aided prediction of residue-residue contacts in transmembrane proteins. Umea University, Umea, Sweden. (Masters thesis)
Grahnen J, Rastogi S, Liberles DA. (2009) Evaluating the dosage balance hypothesis of gene duplicate evolution after whole genome duplication: patterns of gene loss and amino acid substitutions. Presented at the 2009 Annual Meeting of the Society for Molecular Biology and Evolution.
Parchman TL, Buerkle CA, Grahnen J, Benkman CW. (2009) Characterization of gene-based markers and population structure as a basis for dissecting the genetics of serotiny in lodgepole pine. Presented at Evolution 2009.
Hennerdal A, Grahnen J, Elofsson A. (2007) Contact prediction for transmembrane proteins. Presented at the 15th International Conference on Intelligent Systems for Molecular Biology.